ChemSpider 2D Image | ser-gly | C5H10N2O4

ser-gly

  • Molecular FormulaC5H10N2O4
  • Average mass162.144 Da
  • Monoisotopic mass162.064056 Da
  • ChemSpider ID5373223
  • defined stereocentres - 1 of 1 defined stereocentres


More details:






Validated by Experts, Validated by Users, Non-Validated, Removed by Users

687-63-8 [RN]
Glycine, L-seryl- [ACD/Index Name]
Glycine, N-L-seryl-
H-SER-GLY-OH
L-Serylglycin [German] [ACD/IUPAC Name]
L-Serylglycine [ACD/IUPAC Name]
L-Sérylglycine [French] [ACD/IUPAC Name]
ser-gly
((S)-2-Amino-3-hydroxy-propionylamino)-acetic acid
[687-63-8] [RN]
More...

Validated by Experts, Validated by Users, Non-Validated, Removed by Users

ZINC02384922 [DBID]
  • Miscellaneous
    • Chemical Class:

      A dipeptide formed from <stereo>L</stereo>-serine and glycine residues. ChEBI CHEBI:74814
      A dipeptide formed from L-serine and glycine residues. ChEBI https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:74814, CHEBI:74814
    • Compound Source:

      Arabidopsis halleri PlantCyc CPD-12607
      Arabidopsis lyrata PlantCyc CPD-12607
      Arabidopsis thaliana col PlantCyc CPD-12607
      Boechera stricta PlantCyc CPD-12607
      Brassica napus PlantCyc CPD-12607
      Brassica oleracea var. capitata PlantCyc CPD-12607
      Brassica oleracea var. oleracea PlantCyc CPD-12607
      Brassica rapa FPsc PlantCyc CPD-12607
      Brassica rapa subsp. pekinensis PlantCyc CPD-12607
      Capsella grandiflora PlantCyc CPD-12607
      Capsella rubella PlantCyc CPD-12607
      Carica papaya PlantCyc CPD-12607
      Eutrema salsugineum PlantCyc CPD-12607
      glucosinolate biosynthesis from dihomomethionine PlantCyc CPD-12607
      glucosinolate biosynthesis from hexahomomethionine PlantCyc CPD-12607
      glucosinolate biosynthesis from homomethionine PlantCyc CPD-12607
      glucosinolate biosynthesis from pentahomomethionine PlantCyc CPD-12607
      glucosinolate biosynthesis from phenylalanine PlantCyc CPD-12607
      glucosinolate biosynthesis from tetrahomomethionine PlantCyc CPD-12607
      glucosinolate biosynthesis from trihomomethionine PlantCyc CPD-12607
      glucosinolate biosynthesis from tryptophan PlantCyc CPD-12607
      Linum usitatissimum PlantCyc CPD-12607
      Thellungiella parvula PlantCyc CPD-12607
    • Bio Activity:

      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-2-(1H-indol-3-yl)ethan-1-imine + H2O -> (E)-2-(1H-indol-3-yl)-1-thioacetohydroximate + L-seryl-glycine + H+ PlantCyc CPD-12607
      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-omega-(methylsulfanyl)butan-1-imine + H2O -> (E)-N-hydroxy-4-(methylsulfanyl)butimidothioate + L-seryl-glycine PlantCyc CPD-12607
      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-omega-(methylsulfanyl)heptan-1-imine + H2O -> (E)-N-hydroxy-7-(methylsulfanyl)heptimidothioate + L-seryl-glycine PlantCyc CPD-12607
      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-omega-(methylsulfanyl)hexan-1-imine + H2O -> (E)-N-hydroxy-6-(methylsulfanyl)heximidothioate + L-seryl-glycine PlantCyc CPD-12607
      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-omega-(methylsulfanyl)nonan-1-imine + H2O -> (E)-N-hydroxy-9-(methylsulfanyl)nonimidothioate + L-seryl-glycine PlantCyc CPD-12607
      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-omega-(methylsulfanyl)octan-1-imine + H2O -> (E)-N-hydroxy-8-(methylsulfanyl)octimidothioate + L-seryl-glycine PlantCyc CPD-12607
      (E)-1-(L-cysteinylglycin-S-yl)-N-hydroxy-omega-(methylsulfanyl)pentan-1-imine + H2O -> (E)-N-hydroxy-5-(methylsulfanyl)pentimidothioate + L-seryl-glycine PlantCyc CPD-12607
      (Z)-1-(L-cysteinyglycin-S-yl)-N-hydroxy-2-phenylethan-1-imine + H2O -> (Z)-N-hydroxy-2-phenylacetimidothioate + L-seryl-glycine + H+ PlantCyc CPD-12607

Predicted data is generated using the ACD/Labs Percepta Platform - PhysChem Module, version: 14.00

Density: 1.4±0.1 g/cm3
Boiling Point: 577.0±50.0 °C at 760 mmHg
Vapour Pressure: 0.0±3.6 mmHg at 25°C
Enthalpy of Vaporization: 99.2±6.0 kJ/mol
Flash Point: 302.7±30.1 °C
Index of Refraction: 1.538
Molar Refractivity: 35.4±0.3 cm3
#H bond acceptors: 6
#H bond donors: 5
#Freely Rotating Bonds: 4
#Rule of 5 Violations: 1
ACD/LogP: -2.15
ACD/LogD (pH 5.5): -4.31
ACD/BCF (pH 5.5): 1.00
ACD/KOC (pH 5.5): 1.00
ACD/LogD (pH 7.4): -4.63
ACD/BCF (pH 7.4): 1.00
ACD/KOC (pH 7.4): 1.00
Polar Surface Area: 113 Å2
Polarizability: 14.0±0.5 10-24cm3
Surface Tension: 71.4±3.0 dyne/cm
Molar Volume: 113.2±3.0 cm3

Predicted data is generated using the US Environmental Protection Agency�s EPISuite™

                        
 Log Octanol-Water Partition Coef (SRC):
    Log Kow (KOWWIN v1.67 estimate) =  -4.48

 Boiling Pt, Melting Pt, Vapor Pressure Estimations (MPBPWIN v1.42):
    Boiling Pt (deg C):  527.86  (Adapted Stein & Brown method)
    Melting Pt (deg C):  225.61  (Mean or Weighted MP)
    VP(mm Hg,25 deg C):  1.84E-013  (Modified Grain method)
    Subcooled liquid VP: 2.61E-011 mm Hg (25 deg C, Mod-Grain method)

 Water Solubility Estimate from Log Kow (WSKOW v1.41):
    Water Solubility at 25 deg C (mg/L):  1e+006
       log Kow used: -4.48 (estimated)
       no-melting pt equation used

 Water Sol Estimate from Fragments:
    Wat Sol (v1.01 est) =  1e+006 mg/L

 ECOSAR Class Program (ECOSAR v0.99h):
    Class(es) found:
       Neutral Organics-acid

 Henrys Law Constant (25 deg C) [HENRYWIN v3.10]:
   Bond Method :   3.37E-026  atm-m3/mole
   Group Method:   Incomplete
 Henrys LC [VP/WSol estimate using EPI values]:  3.950E-020 atm-m3/mole

 Log Octanol-Air Partition Coefficient (25 deg C) [KOAWIN v1.10]:
  Log Kow used:  -4.48  (KowWin est)
  Log Kaw used:  -23.861  (HenryWin est)
      Log Koa (KOAWIN v1.10 estimate):  19.381
      Log Koa (experimental database):  None

 Probability of Rapid Biodegradation (BIOWIN v4.10):
   Biowin1 (Linear Model)         :   1.1114
   Biowin2 (Non-Linear Model)     :   0.9942
 Expert Survey Biodegradation Results:
   Biowin3 (Ultimate Survey Model):   3.3090  (days-weeks  )
   Biowin4 (Primary Survey Model) :   4.3328  (hours-days  )
 MITI Biodegradation Probability:
   Biowin5 (MITI Linear Model)    :   0.7346
   Biowin6 (MITI Non-Linear Model):   0.8646
 Anaerobic Biodegradation Probability:
   Biowin7 (Anaerobic Linear Model):  0.0362
 Ready Biodegradability Prediction:   YES

Hydrocarbon Biodegradation (BioHCwin v1.01):
    Structure incompatible with current estimation method!

 Sorption to aerosols (25 Dec C)[AEROWIN v1.00]:
  Vapor pressure (liquid/subcooled):  3.48E-009 Pa (2.61E-011 mm Hg)
  Log Koa (Koawin est  ): 19.381
   Kp (particle/gas partition coef. (m3/ug)):
       Mackay model           :  862 
       Octanol/air (Koa) model:  5.9E+006 
   Fraction sorbed to airborne particulates (phi):
       Junge-Pankow model     :  1 
       Mackay model           :  1 
       Octanol/air (Koa) model:  1 

 Atmospheric Oxidation (25 deg C) [AopWin v1.92]:
   Hydroxyl Radicals Reaction:
      OVERALL OH Rate Constant =  38.4249 E-12 cm3/molecule-sec
      Half-Life =     0.278 Days (12-hr day; 1.5E6 OH/cm3)
      Half-Life =     3.340 Hrs
   Ozone Reaction:
      No Ozone Reaction Estimation
   Fraction sorbed to airborne particulates (phi): 1 (Junge,Mackay)
    Note: the sorbed fraction may be resistant to atmospheric oxidation

 Soil Adsorption Coefficient (PCKOCWIN v1.66):
      Koc    :  10
      Log Koc:  1.000 

 Aqueous Base/Acid-Catalyzed Hydrolysis (25 deg C) [HYDROWIN v1.67]:
    Rate constants can NOT be estimated for this structure!

 Bioaccumulation Estimates from Log Kow (BCFWIN v2.17):
   Log BCF from regression-based method = 0.500 (BCF = 3.162)
       log Kow used: -4.48 (estimated)

 Volatilization from Water:
    Henry LC:  3.37E-026 atm-m3/mole  (estimated by Bond SAR Method)
    Half-Life from Model River: 2.219E+022  hours   (9.246E+020 days)
    Half-Life from Model Lake : 2.421E+023  hours   (1.009E+022 days)

 Removal In Wastewater Treatment:
    Total removal:               1.85  percent
    Total biodegradation:        0.09  percent
    Total sludge adsorption:     1.75  percent
    Total to Air:                0.00  percent
      (using 10000 hr Bio P,A,S)

 Level III Fugacity Model:
           Mass Amount    Half-Life    Emissions
            (percent)        (hr)       (kg/hr)
   Air       6.03e-014       6.68         1000       
   Water     34.5            208          1000       
   Soil      65.5            416          1000       
   Sediment  0.0596          1.87e+003    0          
     Persistence Time: 387 hr




                    

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